Showing posts with label gain-of-function. Show all posts
Showing posts with label gain-of-function. Show all posts

AI is crying out for regulation, while virologists doing gain-of-function research take the opposite tack. Why?

Over the past few months, prominent tech leaders have been raising alarms about the dangers of AI, and politicians are following suit. Just last week, the Senate held hearings on how to regulate AI. The tech industry itself is calling for regulation: just a few days ago, Microsoft’s CEO testified before Congress and asked the federal government “to govern AI at every part of its lifecycle.”

One of the founders of AI, Geoffrey Hinton, just left his high-level position at Google so that he could criticize AI without any constraints from his employer. And a couple of weeks ago, I asked the AI program ChatGPT if we should trust AI. No way, it told me.

This is all kind of surprising. AI experts seem to be saying “stop us before we do any harm.” It’s also kind of refreshing: usually the private sector wants the government to stay out of its affairs.

Now contrast all this with the behavior of virologists on a completely different technology: gain-of-function research on deadly pathogens. As I’ve explained before, gain-of-function (GoF) research takes a deadly pathogen, such as the influenza virus or the Covid-19 virus, and modifies it to make it even more deadly. Many scientists, including me, find this work both alarming and of little benefit, and we’ve been calling for it to be regulated for a decade now.

However, unlike AI experts, many virologists are opposed to any hint of regulation of their GoF work. On the contrary: just recently, 156 leading virologists jointly authored an opinion piece that lauded the many wonderful benefits of GoF, and pooh-poohed any risks.

Don’t worry your pretty little heads, these virologists seem to be saying to the rest of the world. We know what we’re doing, and it’s not that risky. Plus it’s great! Not to put too fine a point on it, but I disagree.

What’s caught my attention this week is not just the contrast in their willingness to be regulated, but the question of how one might imagine doing it, in both cases.

Simply defining what we mean by “AI” today is probably impossible. The number and types of programs that incorporate some form of artificial intelligence is vast and already affects our lives in many ways. The recent alarm bells were caused by one particular type of AI, known as large language models (LLMs), which have the ability to fool people in a new way. For several years now, more alarm bells have sounded (justifiably so) over “deep fakes,” images or videos that appear real but that are completely made up. These use completely different technology.

So even if we agree that AI needs to be reined in, no one can really say with any precision what that would mean.

Now let’s look at gain-of-function research on pathogens. One of the biggest objections that some virologists have made, on many occasions, is that there’s no way to define just the harmful research, so we really should just leave it all alone.

For example, the recent commentary by 156 virologists said that “gain-of-function approaches incorporate a large proportion of all research because they are a powerful genetic tool in the laboratory.” This is nonsense. It’s equivalent to saying “hey, this is science, and you don’t want to ban all science, do you?”

They also defend GoF by trotting out examples of research that were beneficial, such as the recent rapid development of Covid-19 vaccines. As was pointed out recently in the biology journal mBio, this is a red herring: it’s just not that difficult to define GoF “research of concern” and distinguish it from other, much more mundane virology and bacteriology research.

In fact, biologists have already done this, in a recent set of proposed new guidelines for regulating GoF research. As Hopkins researcher Tom Inglesby put it, “if you are going to make a more transmissible strain of Ebola, then you need to have the work reviewed by the U.S. government.”

So why do the AI scientists say “please regulate us” while many virologists say “leave our gain-of-function work alone”? It’s not because it’s too hard to define one or the other–if it were, the AI experts wouldn’t even consider regulation as a possibility.

No, it seems that it’s all about money. AI is thriving in both academia and industry, with tremendous growth ahead. The people calling for regulation just aren’t worried about money. They know that AI will continue to thrive, and they are calling for regulation because they seem to have genuine concerns about the threat that AI poses to society.

On the other hand, the world of gain-of-function research is very small, and almost entirely dependent on government funding. Although I’m sure they’ll deny it, these scientists are worried that they’ll lose their grants if even a small portion of GoF research is shut down. They may also be worried about more direct threats to their finances: the conflict-of-interest statement on that recent article by 156 virologists goes on for 731 words. (That is one of the longest conflict-of-interest statements I’ve ever seen on a scientific article.)

I decided to ask an AI (ChatGPT) these questions. When asked about regulating GoF, it replied with a long answer that concluded,

“Ultimately, the decision to regulate gain-of-function research involves weighing the potential risks and benefits. Striking the right balance requires collaboration between scientists, policymakers, and relevant stakeholders to establish guidelines, promote responsible research practices, and implement appropriate oversight mechanisms.”

ChatGPT’s answer about regulating AI was similar, concluding:

“Regulation can play a crucial role in ensuring that AI systems are developed and deployed responsibly... The specific nature and extent of regulation will likely depend on the application and level of risk associated with AI systems. Striking the right balance between regulation and fostering innovation is essential to ensure that AI technology benefits society while safeguarding against potential risks and ethical concerns.”

Overall, not bad advice. Now if only those virologists will listen. 

Gain of function research needs to be banned, but we need to define it properly


I’ve been writing about dangerous gain-of-function research on viruses for years, originally on the flu virus and more recently on the Covid-19 virus. Many people are deeply concerned about this research, which might have caused the Covid-19 pandemic, and yet there are still no real regulations controlling it, neither in the U.S. nor anywhere else.

I can already hear the objections: oh, but what about the new rules that NIH put in place in 2017, after a 3-year “pause” in some gain-of-function (GoF) research? Those rules were utterly ineffective, but I’ll get to that in a minute.

Despite my arguments, and the concerns of many other scientists, which have been expressed in various forums and articles for at least a decade now, the virology community continues to insist that any limits on GoF are unnecessary, and that GoF is wonderfully beneficial. A group of 156 virologists even wrote an opinion piece, published in the Journal of Virology, making this very point.

I’ve tried to convince some of my colleagues in the infectious disease world that GoF should be banned, and I’ve discovered that many of them–even some non-virologists–are opposed to any government regulation of GoF research.

They are wrong. However, they do raise one important concern that I think is valid, and that I will address in this column. Their concern is that any government regulation will be ham-handed, and will likely end up limiting or preventing a range of very useful experiments that have the potential to lead to beneficial new drugs and vaccines.

I get it. When the government tries to regulate science, it can write rules that are far too broad, or that get mis-interpreted even if well-written, and unintended consequences follow. So let’s not do that: below I’ll explain what I think needs to be banned.

But let’s not forget why we are having this debate right now: there is a very real possibility that the Covid-19 pandemic started in a lab that was doing GoF research on coronaviruses. We know that the Wuhan Institute of Virology (WIV) was doing this kind of research–that fact is not under dispute. We don’t know (and we may never know) if the original Covid-19 virus first appeared as a result of a lab leak, but it might have. That’s why we’re asking whether such research is worth the risk.

Before I explain what I think the rules should be, let’s look at the current NIH rules, which I mentioned above. First, though, let’s remember that NIH rules only apply to research funded by NIH. Research that is funded privately, or by any other part of the government, is unaffected by these rules and remains entirely unregulated.

So: back in 2017, when the NIH lifted the 3-year funding pause, they put in place some rules (detailed here) for work on “potential pandemic pathogens,” or PPPs. (The government loves acronyms.)

The pause itself was prompted by work on avian influenza, led by virologists Ron Fouchier and Yoshihiro Kawaoka, that was designed to turn some deadly bird flu viruses into human flu viruses. The work was successful: the researchers did indeed create viruses that had the potential to infect humans. These results were really alarming to many scientists: I wrote about it at the time, and other scientists also raised the alarm. Those concerns are what led to the funding pause.

Since 2017 then, the NIH regulates (but doesn’t ban) research on PPPs that are both:

  1. “likely highly transmissible and likely capable of wide and uncontrollable spread in human populations, and
  2. likely highly virulent and likely to cause significant morbidity and/or mortality in humans.”

One of the first things to notice about this definition is that avian influenza–the very work that prompted the new rules–isn’t really covered.

Another thing to notice is that work on coronaviruses in bats–the GoF work that was apparently going on in the Wuhan Institute of Virology, and that may have caused the Covid-19 pandemic–wouldn’t have been covered either. Those bat viruses would not have been considered “likely highly transmissible in humans,” not before the pandemic.

Of course, we all know differently now.

In any case, the rules that NIH introduced in 2017 only applied to a very narrow class of work, and as far as I can tell, they didn’t restrict anything. On the contrary: the NIH resumed funding the GoF work on avian influenza work by Fouchier and Kawaoka soon after lifting the funding pause. And let’s not forget that NIH rules aren’t a ban: it remains perfectly legal to do any kind of GoF work.

So how can we put in place intelligent restrictions that will prevent dangerous GoF research in the future?

First, rather than rejecting any restrictions whatsoever, as some virologists have done, scientists should work with the government to craft a thoughtful set of limitations. For starters:

  1. Research that creates new strains of the Covid virus (SARS-CoV-2) that might have greater virulence or transmissibility should be entirely banned.
  2. Research that takes non-human viruses, including avian flu and bat coronaviruses, and gives them the ability to infect any new animals, should be banned.

To scientists who can’t even agree on these restrictions, I would say that it appears you oppose any restrictions whatsoever. If that’s your position, then the government might step in and impose far broader bans, which are not likely to be good. If you’ll agree to these two restrictions, perhaps we can broaden them slightly to cover other types of highly risky GoF work.

Finally, let me return to a point I’ve made before, but that bears repeating: the supposed benefits of GoF research are essentially zero. The claim that GoF research that makes a virus more deadly will help us “understand pathogenicity” or “be prepared for the next pandemic” are just hand-waving arguments. I wrote a whole column just last month explaining why these claims are fundamentally wrong, so I won’t repeat that here.

If we do ban some GoF research, with carefully-crafted rules, we won’t lose anything. Instead, we’ll gain at least two things: first, virologists can apply their expertise to truly beneficial virology work, and second, the scientific community will regain some of the trust it has lost during the pandemic. That would seem like a good thing.

Gain-of-function research on viruses justifies itself with a scientific error

We still don’t know where Covid-19 started, although we’re pretty sure it started in or near the city of Wuhan, China. The leading theories are that it started either in the Huanan Wholesale Seafood Market (in Wuhan), a live animal food market, or in the Wuhan Institute of Virology (WIV), a large virus research center in another part of the city.

We might never know, because we’d need access to all of the viruses being studied at WIV in late 2019, and those viruses might not even exist any longer.

I’ve been on the fence about this question since the pandemic started (as I wrote here and here and here), in part because we just don’t have enough data. However, I’m now starting to lean more strongly towards the hypothesis that the Covid-19 virus started in the Wuhan Institute of Virology. I just listened to the interview that Sam Harris did with science journalist Matt Ridley and biologist Alina Chan, who together wrote an entire book on the origins of Covid-19, and the evidence they compiled is compelling.

Let’s look at a few key points.

First, the virus itself, SARS-CoV-2, almost certainly originated in bats, and those bats almost certainly came from caves in southern China, over 1000 kilometers away from Wuhan. The bats didn’t get to Wuhan on their own.

So either someone transported bats to the Huanan Seafood Market, or they transported viruses from the bats to WIV. These are our choices.

Second, WIV was doing research on coronaviruses for years. Their scientists traveled regularly to caves in southern China to find novel viruses, and they’ve acknowledged that WIV’s labs had bat viruses, including viruses related to SARS-CoV-2, before the pandemic began.

Third–and this point is under some dispute–many scientists have argued that the virus was a naturally-occurring one. However, this doesn’t make it more likely that the virus originated in the seafood market. It’s just as likely that a scientist or technician working at WIV was accidentally infected, and then went home (maybe stopping by the seafood market on the way) and started a worldwide pandemic.

Fourth, it’s hard to believe that it’s merely a coincidence that one of the top virology labs in China just happened to be located in the city where the pandemic began. WIV was not only the foremost lab in China doing work on SARS-like viruses, but they also claimed previously that they intended to do gain-of-function work to make these viruses more pathogenic.

This startling fact emerged when a 2018 grant proposal by EcoHealth Alliance, a US-based nonprofit that was working with WIV, was leaked to the press in 2021. Even though that proposal was never funded, the text describes how EcoHealth would genetically engineer new viruses, taking the spike protein from one bat coronavirus and inserting it into a different one, and then infecting mice to see what happens.

But wait, some will say: we now have peer-reviewed studies pointing to the seafood market as the epicenter of the pandemic. (I wrote about those studies back in March 2022.) However, as Alina Chan and Matt Ridley explained to Sam Harris (and in their book), the Chinese authorities in early 2020 focused all their attention on the seafood market, to the exclusion of anywhere else. They collected loads of samples from people who had been in or near the market, and very little from anywhere else. Thus we seem to have a classic case of confirmation bias: when you only look at the place where you’re convinced the virus originated, and you find some evidence, then you stop looking. We simply don’t know if the virus was anywhere else.

Now, to the main topic for today: the scientific error used to justify gain-of-function research on dangerous viruses, the error that might have led to the Covid-19 pandemic. Let me explain.

Why, one might ask, were scientists from the Wuhan Institute of Virology going out into the wild, to places where humans would not otherwise go, and bringing back deadly viruses?

This doesn’t just happen in China. The US is funding a large effort to do exactly the same thing: through a program called DEEP VZN (”deep vision,” get it?), USAID is funding scientists in the US and in Africa, Asia, and Latin America to venture into unpopulated areas of the jungle, and to find animals carrying viruses that might infect humans. They’re hoping (!) to discover 8,000 to 12,000 new viruses, and they’re particularly interested in viruses that could cause the next pandemic.

Why does anyone do this? Virus hunters believe that through these efforts, they can predict which of these viruses are destined to become the next pandemic. Furthermore, the argument goes, through gain-of-function research, virologists will be able to determine just what the new pandemic strains will look like. Then, armed with this knowledge, they can convince governments and private companies to design, manufacture, and stockpile vaccines against these viruses. This way (the argument goes) when the pandemic emerges, we’ll be ready.

At the center of this scientific strategy is an obvious error about evolution.

I’ll have to get a bit technical to explain here, so bear with me: the genome of the SARS-CoV-2 virus contains about 30,000 bases of RNA. The key protein that lets it infect human cells is called the Spike protein, which is about 1300 amino acids long and is encoded by about 3900 RNA bases. RNA has an alphabet of 4 letters (A, C, G, and U), which means that each of those positions can mutate into one of the other 3 letters. So we have almost 12,000 possible mutations that affect just one base in the Spike protein.

But 2 or more mutations can happen at once, quite easily, and this too could make the virus more infectious. How many combinations of 2 positions and 3 mutations are possible? Well, about 650,000,000.

And these aren’t the only mutations that might create a pandemic virus. So we’re supposed to believe that:

  1. gain-of-function experiments in the lab will create precisely the same mutations that would happen in the wild, and
  2. virologists can then predict, based on their experiments, that a virus is likely to cause a pandemic, and
  3. this evidence is so convincing that governments will manufacture and stockpile vaccines based on these experiments, and
  4. that this in turn will allow us to prevent the next pandemic.

Yeah, right. The evolutionary mistake is in the first point above, by the way.

Something happened in Wuhan. You might think that virologists, upon hearing about the gain-of-function research at WIV, would pause and think, oh no, we hope our colleagues’ research didn’t cause the pandemic! But instead, they closed ranks and doubled down.

In case you think I’m exaggerating, consider this: just a month ago, 156 virologists co-authored an article in the Journal of Virology that declared:

“gain-of-function research-of-concern can very clearly advance pandemic preparedness and the development of vaccines and antivirals. These tangible benefits often far outweigh the theoretical risks posed by modified viruses.”

In case that wasn’t clear enough, they assert twice more in the article that gain-of-function research will help us prepare for pandemics.

Virologists have been making this argument for years, and yet their experiments had no benefit at all–none, zero, zip–when we were finally faced with a true pandemic. Why should we believe this claim now?

Instead, it’s possible that gain-of-function research, along with the search for novel viruses in the wild, might have accidentally caused the pandemic.

Let me conclude by emphasizing that the vast majority of research on viruses and infectious diseases is incredibly important. Vaccines, antibiotics, antivirals, and other treatments have saved millions of lives, and the scientists doing this work should be applauded. Shutting down dangerous gain-of-function research–by which I mean research designed to take a virus or bacterium and make it more deadly in humans or in other animals–would only affect a tiny percentage of virologists worldwide. Let’s tell them to stop. If they can’t find something better to do, other scientists can.

Panel recommends new controls on deadly gain-of-function research. Will the government listen?

Illustration by Erik English

This past week, a government-appointed panel of scientists released a new report recommending 13 actions the U.S. government should take to control “gain-of-function” research that has the potential to create deadly new pathogens.

This has been a long time coming, but the first thing I want to point out is that this is just an advisory panel. The government hasn’t done anything yet. Let’s unpack what happened, shall we?

First, the panel is called the NSABB: the National Science Advisory Board for Biosecurity. The new report, which was at least 3 years in the making, was created in response to a decade’s worth of concerns, raised by many scientists (including me - see my previous articles here and here and here, among others), about the dangers of a specific kind of research known as gain-of-function.

What is gain-of-function (GoF) research? Well, it can include many scientific experiments, including some that are perfectly reasonable. But the term has been used most often to refer to experiments that are designed to take a virus such as influenza or SARS-CoV-2 and alter it intentionally to make it more deadly.

This seems crazy, right? Yet it’s been going on in the influenza virus research world for at least a decade, which is why many scientists have raised alarms.

The Covid-19 pandemic gave this issue much greater urgency, after suspicions arose that the Covid-19 virus, SARS-CoV-2, might have emerged (accidentally) from gain-of-function experiments at a major virology lab in Wuhan, China. (It probably didn’t, but we still don’t know for sure, as I’ve explained in previous columns.)

So back to the topic at hand: the new NSABB report. What do they recommend, and will it matter? I don’t want to go through all 13 recommendations, but overall it’s a very good start, if (and only if) the U.S. government takes them seriously and implements them all.

And the virology community is already pushing back - but first let me go into just three of the recommendations.

First, the panel recommends that the government require that all GoF research undergo federal-level review if the work is

“reasonably anticipated to enhance the transmissibility and/or virulence of any pathogen.”

Believe it or not, GoF research that does this kind of thing is going on right now, and there’s no rule saying it must be reviewed first.

Second, the panel recommends that the government only allow such research if there’s simply no better, lower-risk way to gain the same scientific insights. As they put it, scientists who want to do GoF work would have to prove that

“there are no feasible alternative methods ... that poses less risk ... and the risks are justified by the potential benefits.”

That’s a high bar to clear, but it seems eminently reasonable to insist upon it before allowing dangerous GoF research to proceed.

The panel also recommends that the new restrictions on gain-of-function research apply to all research in the U.S., regardless of whether it’s funded by the government. This is an important addition, as illustrated recently when Boston University, after being called out for dangerous gain-of-function experiments on the Covid-19 virus, claimed that they didn’t use NIH funds for this, so (they argued) they didn’t break any rules. Technically, they were correct. This recommendation will close that giant loophole.

There’s much more in the NSABB report, and my primary reaction is that (1) it’s a good start and (2) it’s not nearly enough. I’d like to see the government make a blanket statement that research that will make deadly viruses even more deadly is simply forbidden, at least for now. If someone wants an exception, they could make the case, but I’ve yet to see a good argument for these experiments.

What about that pushback from the virologists that I mentioned above? Well, in a lengthy commentary just published in the Journal of Virology, 156 virologists argue that gain-of-function research is wonderful! And it’s brought so many benefits! Just let us handle this, and don’t worry, they seem to be saying.

To make the benefits explicit, the 156 virologists include a table listing dozens of “useful examples” of gain-of-function research. Let’s look at just two of them.

Example 1: the virologists assert that experiments on a virus called M13 led to faster computers, citing a 2018 article. First, this is nonsense: no one has been a faster computer using a modified M13 virus. Second, the M13 virus is harmless to humans (it only infects bacteria), so it wouldn’t be subject to any regulations on GoF research in human pathogens.

Example 2: this one is even more outrageous. The table lists as a “benefit” an experiment that “established that H5N1 has capacity for mammalian transmissibility.” They then cite a notorious experiment from 2012 in which scientists intentionally modified a deadly bird flu virus (H5N1) in order to make it possible for the virus to be transmitted directly between mammals. This was one of the key experiments that led to the widespread alarm about GoF research in the first places. (I wrote about it back in 2013.)

So no, creating a more-deadly virus and then saying “see? look how dangerous this virus is?” is not what I’d call useful.

Clearly, the virologists who wrote this commentary do not want to see any restrictions at all on the kind of research they do. They just don’t see the need for it. Obviously, I disagree, as do many others, including many virologists who support the NSABB recommendations.

As I wrote at the beginning of this piece, the NSABB report is just a set of recommendations, and the government might not do anything. I hope that the government will implement all of them, and then go even further, and put a stop to the dangerous, sometimes reckless experiments that a very small minority of scientists are engaging in.

We need to study viruses, and we need to control infectious diseases, but we can do this without making pathogens more deadly.

New report says COVID was probably a lab leak: should we believe it?

 

A week ago, Vanity Fair and ProPublica published a long exposé on the origins of Covid-19, in which they revealed new evidence of a lab leak in the Wuhan Institute of Virology (WIV) in November 2019.

The big reveal: the report makes it appear much more likely than before that Covid-19 originated through an accident at WIV, where presumably one of the scientists was exposed to the virus. The new evidence in the ProPublica report largely centers on the work of a translator, Toy Reid, who claims to have a unique gift for interpreting the “secret language of Chinese officialdom.” Even native Chinese speakers can’t really follow it, he claims in the article.

Reid scrutinized a collection of internal and external communications from WIV, and says that he found messages in the fall of 2019 that indicated “inhumane working conditions and hidden safety dangers.” And most significantly, a message on November 12 refers to some kind of biosecurity breach, which might have referred to an accidental exposure of someone in the lab to a virus.

The date of this incident appears to coincide with an incident described in a 2021 article in the Wall St. Journal, which reported that 3 WIV employees sought hospital care in November of 2019. This incident has never been confirmed to involve Covid-19 infections.

To add some context: Reid’s findings were released by a Republican U.S. Senator, Richard Burr, in a report that was not endorsed by the full Senate committee investigating COVID-19’s origins. Burr’s report concluded that Covid-19 was “more likely than not, the result of a research-related incident.”

Not surprisingly, this new report has been getting a lot of attention.

The report initially might seem convincing, until you realize that it doesn’t include any actual biological evidence: no reports of actual infections, and no specifics about any viruses that might have escaped from WIV at the time. It seems to be based entirely on the translation super-powers of Toy Reid.

It didn’t take long for other experts to weigh in. There are plenty of Chinese-language speakers out there, including native speakers who are likely much more fluent than Toy Reid. One translator wrote on Twitter that Reid “screwed up.” Another said that a critical passage identified by Reid “doesn’t suggest a biosafety problem had occurred at all.”

Hmm. Here I have to admit that I have no idea who is right here, since I don’t speak or read Chinese. However, it does appear that ProPublica and Vanity Fair may have put too much faith in a single translator who might have had a political bias.

And there’s more. A number of virologists weighed in to point out that the Vanity Fair piece had ignored work that pointed to the Huanan Wholesale Seafood Market (in Wuhan) as the source of the virus. I wrote at length about that research in March, when 3 new scientific papers had just appeared (as preprints), all pointing fingers at the seafood market as the source of the pandemic.

Unfortunately, all of the evidence in those papers was circumstantial. None of them found an infected animal that was the true source of Covid-19. Instead, they found that many early cases in people were centered on the seafood market. Even supposing that is correct (and it might not be, because China never allowed outside scientists to go to Wuhan and test people all over the city), it is still just circumstantial. Perhaps a scientist from WIV got infected and stopped by the seafood market that day–we may never know.

But let’s return to this week’s controversy, shall we? A virologists who led one of the papers I discussed back in March, Michael Worobey, was also quoted in the Vanity Fair article. He had major objections to what they wrote, and he posted them in a lengthy Twitter thread here, which is well worth reading.

Vanity Fair described Worobey’s work as providing evidence that a natural zoonotic origin (in other words, an origin in an animal at the Wuhan seafood market) for Covid-19 was “plausible.” Worobey objected, pointing out that his comments were much more definitive, and that his position is that:

"OUR TWO RECENT PAPERS establish that a natural zoonotic origin is THE ONLY plausible scenario for the origin of the pandemic." (all-caps in original)

After Worobey’s Twitter thread appeared, Vanity Fair and ProPublica updated their stories to include exactly that quote, without the all-caps.

Worobey makes a compelling case that Vanity Fair and ProPublica misquoted him (or at least omitted important details), and it seems they have fixed that error. However, neither the Twitter thread nor Worobey’s scientific paper make a definitive case that, as he puts it, a natural origin is the “only plausible scenario” for Covid-19.

Not at all. The paper by Worobey and colleagues concluded that “the earliest known COVID-19 cases from December 2019 were geographically centered on this market.” Let’s grant that this statement is accurate: even so, their data does not prove that the market was the “origin” of the pandemic, especially because they failed to find any animals infected with Covid-19 from that market. They only found human cases. This leaves open the question of where the very first human case occurred: it’s entirely possible that the first human was infected elsewhere–perhaps at the Wuhan Institute of Virology–and that human visited the seafood market while actively spreading the virus.

And their data relies on samples collected in Wuhan, which is of course controlled by the Chinese government. Note the wording of that conclusion from the paper, which refers to “the earliest known cases.” China does not want the world to think that the Wuhan Institute of Virology might have caused the pandemic, so how can we ever know if there were early cases originating from WIV?

On the other hand, as I wrote back in March, China has known for decades that their live animal markets are a source for novel human viruses, including the 2003 SARS outbreak and multiple cases of avian influenza jumping from birds into people. And yet they have done nothing to shut down those markets.

So it’s complicated. In any case, as Matthew Iglesias pointed out in The Guardian, even if the entire Vanity Fair article is wrong, the lab leak hypothesis is still plausible–very much so. The fact remains that one of China’s major virology research institutes, which was known to be conducting research on SARS-like viruses, and which was known to be collecting viruses from bats, is located just a few miles from the live animal seafood market. That’s one heck of a coincidence.

Finally, let’s take a step back: why all this attention to whether the virus originated from a virology institute or from a live animal market? Either way, the implication is that humans caused this pandemic. As I wrote back in March, we should take away at least two lessons from this experience: first, that live-animal food markets should be shut down, especially those that sell wild animals rather than farm-raised ones; and second, that gain-of-function research on deadly viruses should be shut down as well.

So let’s stop arguing about the precise origin of the pandemic, and start taking steps to prevent the next one.